Public Data Portal - Specimen Record

 
 
 
 
 
Specimen Data Sequences Combined
  Record Details For CYTC1330-12     Back to Search: Records
  IDENTIFIERS:
  Sample ID: JN398378 Museum ID:
  Field ID: JN398378 Collection Code:
  Deposited In: Mined from GenBank, NCBI
 

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  TAXONOMY:
  Phylum: Chordata Subfamily:
  Class: Mammalia Genus: Equus
  Order: Perissodactyla Species: Equus ferus
  Family: Equidae Subspecies: Equus ferus caballus
  BIN (Cluster ID): BOLD:AAB1900
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: Reproduction:
  Tissue Descriptor: Sex:
  Brief Note: Equus caballus Life Stage:
  Detailed Notes: haplogroup:A|haplotype:|isolate:2_CsP01|subspecies:|Note:breed: Maremmano|
 
  COLLECTION DATA:
  Country: Date Collected:
  Province/State: Collectors:
  Region/County:    
  Sector:    
  Exact Site:    
  Latitude: Elevation:
  Longitude: Elv. Accuracy:
  Coord. Source: Depth:
  Coord. Accuracy: Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: CYTC1330-12.COI-5P GenBank Accession: JN398378
  Last Updated: 2017-06-19 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 957 bp
 
CACAAAGACATCGGCACTCTGTACCTCCTATTCGGCGCTTGAGCTGGAATAGTAGGAACTGCCCTAAGCCTCCTA
ATCCGTGCTGAATTAGGCCAACCTGGGACCCTACTAGGAGATGATCAGATCTACAATGTCATTGTAACCGCCCAT
GCATTCGTAATAATTTTCTTTATGGTCATACCCATTATAATCGGAGGATTCGGAAACTGATTAGTCCCCCTGATA
ATTGGAGCACCTGATATAGCTTTCCCCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTT
CTTCTCGCTTCCTCAATAATTGAAGCAGGTGCCGGAACAGGCTGAACCGTATATCCTCCTCTAGCTGGAAATCTG
GCGCATGCAGGAGCCTCTGTTGACTTAACCATTTTCTCTCTCCACCTAGCTGGGGTGTCCTCGATTTTAGGTGCC
ATCAACTTTATTACCACAATCATTAACATAAAACCACCAGCCCTATCCCAATATCAAACCCCCCTATTCGTTTGA
TCTGTCCTTATTACGGCAGTACTCCTTCTCCTAGCCCTCCCGGTCCTAGCAGCAGGCATTACCATGCTTCTCACA
GACCGTAACCTGAACACTACTTTCTTCGACCCCGCAGGAGGAGGGGATCCAATCCTTTATCAACACCTATTCTGA
TTCTTCGGACACCCCGAAGTCTATATTCTTATCCTACCAGGCTTCGGTATAATCTCACACATCGTCACATACTAC
TCAGGTAAAAAGGAACCTTTTGGCTACATGGGTATAGTGTGAGCTATAATATCCATTGGCTTTCTAGGCTTCATC
GTATGGGCTCACCACATGTTTACAGTAGGGATAGACGTTGACACACGAGCATACTTCACATCAGCTACCATAATC
ATCGCTATCCCTACTGGTGTAAAAGTATTCAGCTGACTAGCCACCCTGCACGGAGGA
  Amino Acids:  
 
HKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLM
IGAPDMAFPRMNNMSFWLLPPSFLLLLASSMIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGA
INFITTIINMKPPALSQYQTPLFVWSVLITAVLLLLALPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFW
FFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMI
IAIPTGVKVFSWLATLHGG
  Illustrative Barcode:
 
   

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit

  SEQUENCE: atp6   [Funding Source: N/A]
  Sequence ID: CYTC1330-12.atp6 GenBank Accession:
  Last Updated: 2017-06-19 Genome: Mitochondrial
  Locus: ATP synthase subunit 6
  Nucleotides: 678 bp
 
ATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCAACAATAGTAGGCCTCCCTATTGTAATTCTGATCATCATA
TTTCCCAGCATCCTATTCCCCTCACCCAACCGACTAATCAACAATCGCCTAATCTCAATTCAACAATGGCTAGTC
CAACTTACATCAAAACAAATAATAGCTATCCATAACAGCAAAGGACAAACCTGAACTCTTATACTCATATCACTG
ATCCTATTCATTGGCTCAACAAACTTATTAGGCCTACTACCTCACTCATTTACACCAACAACACAACTATCAATA
AACCTAGGCATAGCTATTCCCCTATGGGCAGGGACAGTATTCATAGGCTTTCGTCACAAAACAAAAGCAGCCCTA
GCCCACTTTCTACCTCAAGGGACGCCCATTTTCCTCATCCCCATACTAGTAATTATCGAGACTATCAGCCTATTT
ATTCAACCTGTAGCCCTAGCCGTGCGGCTAACCGCTAACATTACCGCCGGACACCTCCTAATACACCTCATCGGA
GGGGCAACACTAGCCCTCATAAGCATCAGCCCCTCAACAGCCCTTATTACGTTTATCATCCTAATTCTACTAACT
ATCCTCGAATTCGCAGTAGCTATAATCCAAGCCTACGTATTCACTCTCCTGGTAAGCCTTTACTTACACGACAAC
ACC
  Amino Acids:  
 
MNENLFASFATPTMVGLPIVILIIMFPSILFPSPNRLINNRLISIQQWLVQLTSKQMMAIHNSKGQTWTLMLMSL
ILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVFMGFRHKTKAALAHFLPQGTPIFLIPMLVIIETISLF
IQPVALAVRLTANITAGHLLMHLIGGATLALMSISPSTALITFIILILLTILEFAVAMIQAYVFTLLVSLYLHDN
T
  Illustrative Barcode:
 
   

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit

  SEQUENCE: CYTB   [Funding Source: N/A]
  Sequence ID: CYTC1330-12.CYTB GenBank Accession:
  Last Updated: 2017-06-19 Genome: Mitochondrial
  Locus:
  Nucleotides: 1137 bp
 
ATGACAAACATCCGGAAATCTCACCCACTAATTAAAATCATCAATCACTCTTTTATTGACCTACCAGCCCCCTCA
AACATTTCATCATGATGAAACTTCGGCTCCCTCCTAGGAATCTGCCTAATCCTCCAAATCTTAACAGGCCTATTC
CTAGCCATACACTACACATCAGACACGACAACTGCCTTCTCATCCGTCACTCACATCTGCCGAGACGTTAACTAC
GGATGAATTATTCGCTACCTCCATGCCAACGGAGCATCAATATTTTTTATCTGCCTCTTCATTCACGTAGGACGC
GGCCTCTACTACGGCTCTTACACATTCCTAGAGACATGAAACATTGGAATCATCCTACTTTTCACAGTTATAGCT
ACAGCATTCATGGGCTATGTCCTACCATGAGGCCAAATATCCTTTTGAGGAGCAACAGTCATCACGAACCTCCTA
TCAGCAATTCCCTACATCGGTACTACCCTCGTCGAGTGAATCTGAGGTGGATTCTCAGTAGACAAAGCCACCCTT
ACCCGATTTTTTGCTTTCCACTTCATCCTACCCTTCATCATCACAGCCCTGGTAGTCGTACATTTACTATTTCTT
CACGAAACAGGATCTAATAACCCCTCAGGAATCCCATCCGATATGGACAAAATCCCATTCCACCCATATTATACA
ATTAAAGACATCCTAGGACTCCTCCTCCTGATCTTGCTCCTACTAACTCTAGTATTATTCTCCCCCGACCTCCTA
GGAGACCCAGACAACTACACCCCAGCTAACCCTCTCAGCACTCCCCCTCATATTAAACCAGAATGGTACTTCCTG
TTTGCCTACGCCATCCTACGCTCCATTCCCAACAAACTAGGCGGCGTATTAGCCCTAATCCTCTCCATCCTGATC
CTAGCACTCATCCCCACCCTCCACATATCAAAACAACGAAGCATAATATTCCGGCCTCTCAGCCAATGCGTATTC
TGACTCTTAGTGGCAGACTTACTGACACTAACATGAATCGGCGGACAGCCAGTGGAACACCCATACGTAATTATC
GGCCAACTGGCCTCAATCCTCTACTTCTCCCTAATTCTCATTTTTATACCACTCGCAAGCACCATCGAAAACAAT
CTTCTAAAATGA
  Amino Acids:  
 
MTNIRKSHPLIKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNY
GWIIRYLHANGASMFFICLFIHVGRGLYYGSYTFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLL
SAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVVVHLLFLHETGSNNPSGIPSDMDKIPFHPYYT
IKDILGLLLLILLLLTLVLFSPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILI
LALIPTLHMSKQRSMMFRPLSQCVFWLLVADLLTLTWIGGQPVEHPYVIIGQLASILYFSLILIFMPLASTIENN
LLKW
  Illustrative Barcode:
 
   

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit

  SEQUENCE: COII   [Funding Source: N/A]
  Sequence ID: CYTC1330-12.COII GenBank Accession:
  Last Updated: 2017-06-19 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 2
  Nucleotides: 676 bp
 
ATGGCCTACCCCTTCCAACTAGGATTCCAAGACGCAACATCCCCTATTATAGAAGAACTCCTACACTTCCACGAC
CACACACTAATAATCGTATTCCTAATTAGCTCTCTAGTATTATATATTATCTCATCAATACTAACAACTAAATTA
ACCCATACCAGCACCATAGATGCTCAAGAAGTAGAGACAATTTGAACGATTTTACCAGCCATCATCCTTATTCTA
ATCGCCCTCCCATCCCTACGAATTCTATATATAATAGATGAAATCAATAATCCGTCCCTCACAGTCAAAACAATA
GGCCACCAATGATACTGAAGCTACGAGTATACCGATTACGAAGACTTGACCTTTGACTCCTACATGATCCCCACA
TCAGACCTAAAACCAGGAGAATTACGTCTTCTAGAAGTCGACAATCGAGTGGTTCTCCCCATAGAAATAACCATC
CGAATGCTAATTTCATCCGAAGACGTCCTACACTCATGAGCTGTGCCCTCCCTAGGCCTAAAAACAGACGCTATC
CCTGGGCGCCTAAATCAGACAACTCTCGTGGCCTCTCGACCAGGACTTTACTACGGTCAATGCTCAGAGATCTGC
GGATCAAACCACAGCTTTATACCAATTGTCCTTGAACTAGTTCCACTGAAACACTTCGAAGAATGATCTGCATCA
A
  Amino Acids:  
 
MAYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISSMLTTKLTHTSTMDAQEVETIWTILPAIILIL
IALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLTFDSYMIPTSDLKPGELRLLEVDNRVVLPMEMTI
RMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLVASRPGLYYGQCSEICGSNHSFMPIVLELVPLKHFEEWSAS
X
  Illustrative Barcode:
 
   

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit

  SEQUENCE: COXIII   [Funding Source: N/A]
  Sequence ID: CYTC1330-12.COXIII GenBank Accession:
  Last Updated: 2017-06-19 Genome: Mitochondrial
  Locus: cytochrome c oxidase subunit III
  Nucleotides: 781 bp
 
ATGACCCACCAAACCCACGCTTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGAGCCCTATCAGCCCTC
CTGATAACATCAGGACTAGCCATGTGATTTCACTTTAACTCAACCTTACTTCTAGCTATAGGGCTATTAACTAAC
ATCCTTACCATATATCAATGATGACGAGACATCATCCGAGAAAGCACATTCCAAGGCCATCACACATCAATCGTT
CAAAAGGGACTCCGATATGGCATAATCCTTTTTATTATCTCAGAAGTCTTCTTCTTCTCTGGCTTCTTCTGAGCC
TTTTACCACTCAAGCCTAGCCCCCACACCCGAACTAGGCGGCTGCTGACCACCCACAGGTATCCACCCCTTAAAC
CCCCTAGAAGTCCCCTTACTCAACACCTCAGTGCTCCTAGCATCTGGAGTCTCTATCACCTGAGCCCACCATAGC
CTAATAGAAGGAAACCGTAAAAATATGCTCCAAGGCCTATTCATCACAATTTCACTAGGCGTATACTTCACCCTT
CTCCAAGCCTCAGAATACTATGAAGCCTCATTTACTATTTCAGATGGAGTATACGGATCAACATTTTTCGTAGCA
ACAGGGTTCCACGGACTACACGTAATTATCGGATCTACCTTCCTCATTGTATGTTTCCTACGCCAACTAAAATTC
CACTTTACATCCAGCCACCACTTCGGATTCGAAGCAGCCGCTTGATACTGACACTTCGTCGACGTAGTCTGACTA
TTCTTGTACGTCTCTATTTATTGATGAGGAT
  Amino Acids:  
 
MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHFNSTLLLAMGLLTNILTMYQWWRDIIRESTFQGHHTSIV
QKGLRYGMILFIISEVFFFSGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHS
LMEGNRKNMLQGLFITISLGVYFTLLQASEYYEASFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFLRQLKF
HFTSSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGX
  Illustrative Barcode:
 
   

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
Generated using the BOLD API

													
  Specimen Images: N/A
Collection Site: N/A
  Attribution:
Specimen Depository: Mined from GenBank, NCBI
Sequencing Center:
Photography:
Collectors:
Specimen Identification:
Project Manager: Sujeevan Ratnasingham
Sequencing Support: